Comparative co-expression across species. These are the terms used on the page; hover over a dotted term there to see the same text.
Every threshold starts at the study's published definition. When you change one, results computed with it are marked "not the published definition". The network and co-expressolog limits can only be made stricter than what is stored.
The functional analysis tests a gene's co-expression module with topGO's elim algorithm and Fisher's exact test, on the study's GO mapping and expressed-gene background. Terms are listed at P < 0.001 by default; P < 0.005 and P < 0.01 can be chosen. The P values are not adjusted for multiple testing, because elim's tests depend on one another. The technical note GO_cutoff_technical_note.md reports how the default was chosen. The classic test with Benjamini-Hochberg adjustment, as used for the tables of the root cold-stress paper, is also offered.
Every table downloads as TSV or CSV, and every chart as SVG or PNG. Each download names the source (), the study, the thresholds and a link that reopens the same view. "copy link" gives that link.